Datasets

scRNA-seq

Paper	Dataset	Download Link
Replogle et al., 2022	K562_GWPS (61.3GB)	download
Replogle et al., 2022	K562_ESSENTIAL (9.9GB)	download
Replogle et al., 2022	RPE1 (8.1GB)	download
Nadig et al., 2025	HEPG2 (5.2GB)	download
Nadig et al., 2025	JURKAT (8.7GB)	download
Norman et al., 2019	Norman_K562	download

• The H1 dataset was obtained from the Virtual Cell Challenge 2025 (download).

  • NOTE: ESM2 gene embeddings can also be obtained from here.

scATAC-seq

• Cell-by-cCRE / Cell-by-peak: Human-scATAC-Corpus